Number of segment pairs = 30; number of pairwise comparisons = 15 '+' means given segment; '-' means reverse complement Overlaps Containments No. of Constraints Supporting Overlap ******************* Contig 1 ******************** R2+ R3+ is in R2+ R1+ is in R3+ R4- R5- is in R4- R6- is in R4- DETAILED DISPLAY OF CONTIGS ******************* Contig 1 ******************** . : . : . : . : . : . : R2+ AGTTTTAGTTTTCCTCTGAAGCAAGCACACCTTCCCTTTCCCGTCTGTCTATCCATCCCT R3+ AGTTTTAGTTTTCCTCTGAAGCAAGCACACCTTCCCTTTCCCGTCTGTCTATCCATCCCT R1+ AGTTTTAGTTTTCCTCTGAAGCAAGCACACCTTCCCTTTCCCGTCTGTCTATCCATCCCT ____________________________________________________________ consensus AGTTTTAGTTTTCCTCTGAAGCAAGCACACCTTCCCTTTCCCGTCTGTCTATCCATCCCT . : . : . : . : . : . : R2+ GACCCTGTTGTCTGTCTATCCCTGACCCCGTAGTCTCCTAAGTCGCCCCAGATTTTGTGA R3+ GACCCTGTTGTCTGTCTATCCCTGACCCCGTAGTCTCCTAAGTCGCCCCAGATTTTGTGA R1+ GACCCTGTTGTCTGTCTATCCCTGACCCCGTAGTCTCCTAAGTCGCCCCAGATTTTGTGA ____________________________________________________________ consensus GACCCTGTTGTCTGTCTATCCCTGACCCCGTAGTCTCCTAAGTCGCCCCAGATTTTGTGA . : . : . : . : . : . : R2+ ACACCCTCTGGAACTAGAATCTAGTGGGCGGATGGACCATTTACTAGACGGAGGTAGAGG R3+ ACACCCTCTGGAACTAGAATCTAGTGGGCGGATGGACCATTTACTAGACGGAGGTAGAGG R1+ ACACCCTCTGGAACTAGAATCTAGTGGGCGGATGGACCATTTACTAGACGGAGGTAGAGG ____________________________________________________________ consensus ACACCCTCTGGAACTAGAATCTAGTGGGCGGATGGACCATTTACTAGACGGAGGTAGAGG . : . : . : . : . : . : R2+ TGGGTGGATGCGAAGCACAGGGTGCATAGTCAGCCCGGTTTTAAGGGCAGGTCACTTGGT R3+ TGGGTGGATGCGAACGACAGGGTGCATAGTCAGCCCGGTTTTAAGGGCAGGTCACTTGGT R1+ TGGGTGGATGCGA-CGACAGGGTGCATAGTCAGCCCGGTTTTAAGGGCAGGTCACTTGGT ____________________________________________________________ consensus TGGGTGGATGCGAACGACAGGGTGCATAGTCAGCCCGGTTTTAAGGGCAGGTCACTTGGT . : . : . : . : . : . : R2+ AGGTCAGCAGGCGGGTCAGTGGGCGGGTGCCTGCAGCATTTATGAACTTATTTGGCCCAG R3+ AGGTCAGCAGGCGGGTCAGTGGGCGGGTGCCTGCAGCATTTATGAACTTATTTGGCCCAG R1+ AGGTCAGCAGGCGGGTCAGTGGGCGGGTGCCTGCAGCATTTATGAACTTATTTGGCCCAG ____________________________________________________________ consensus AGGTCAGCAGGCGGGTCAGTGGGCGGGTGCCTGCAGCATTTATGAACTTATTTGGCCCAG . : . : . : . : . : . : R2+ CAAACATTTTGAGTGTCAGGCCGTGCCTACCCAAGGTGAGGGTAAGGAGCAAAATCAGCC R3+ CAAACATTTTGAGTGTCAGGCCGTGCCTACCCAAGGTGAGGGTAAGGAGCAAAATCAGCC R1+ CAAACATTTTGAGTGTCAGGCCGTGCCTACCCAAGGTGAGGGTAAGGAGCAAAATCAGCC ____________________________________________________________ consensus CAAACATTTTGAGTGTCAGGCCGTGCCTACCCAAGGTGAGGGTAAGGAGCAAAATCAGCC . : . : . : . : . : . : R2+ CAGCCCAGAGCACTGGGTGGCTACACAGAGCCGACCTCTAATGTGCGCTCCGGGTCGGGA R3+ CAGCCCAGAGCACTGGGTGGCTACACAGAGCCGACCTCTAATGTGCGCTCCGGGTCGGGA R1+ CAGCCCAGAGCACTGGGTGGCTACACAGAGCCGACCTCTAATGTGCGCTCCGGGTCGGGA ____________________________________________________________ consensus CAGCCCAGAGCACTGGGTGGCTACACAGAGCCGACCTCTAATGTGCGCTCCGGGTCGGGA . : . : . : . : . : . : R2+ TGGCACTCAGCTCGCCTTTAGGGAGTGATGATCTGGATGCCTGGCTTGGAGGTGACAGAG R3+ TGGCACTCAGCTCGCCTTTAGGGAGTGATGATCTGGATGCCTGGCTTGGAGGTGACAGAG R1+ TGGCACTCAGCTCGCCTTTAGGGAGTGATGATCTGGATGCCTGGCTTGGAGGTGACAGAG R4- CACTCAGCTCGCCTTTAGGGAGTGATGATCTGGATGCCTGGCTTGGAGGTGACAGAG ____________________________________________________________ consensus TGGCACTCAGCTCGCCTTTAGGGAGTGATGATCTGGATGCCTGGCTTGGAGGTGACAGAG . : . : . : . : . : . : R2+ CCTGCCCTTATGAGACAATTAAGAGACTGACTAAGCACCCGGCAGGAGGCCACGAGAATC R3+ CCTGCCCTTATGAGACAATTAAGAGACTGACTAAGCACCCGGCAGGAGGCCACGAGAATC R1+ CCTGCCCTTATGAGACAATTAAGAGACTGACTAAGCACCCGGCAGGAGGCCACGAGAATC R4- CCTGCCCTTATGAGACAATTAAGAGACTGACTAAGCACCCGGCAGGAGGCCACGAGAATC R6- C ____________________________________________________________ consensus CCTGCCCTTATGAGACAATTAAGAGACTGACTAAGCACCCGGCAGGAGGCCACGAGAATC . : . : . : . : . : . : R2+ CCCATGTGAGAAAGAAGAGCATAAACAGGAAACACATTTAATAATTAAACAAAGATAACT R3+ CCCATGTGAGAAAGAAGAGCATAAACAGGAAACACATTTAATAATTAAACAAAGATAACT R1+ CCCATGTGAGAAAGAAGAGCATAAACAGGAAACACATTTAATAATTAAACAAAGATAACT R4- CCCATGTGAGAAAGAAGAGCATAAACAGGAAACACATTTAATAATTAAACAAAGATAACT R6- CCCATGTGAGAAAGATGAGCATAAACAGGAACCACATTTAATAATTAAACAAAGATAACT ____________________________________________________________ consensus CCCATGTGAGAAAGAAGAGCATAAACAGGAAACACATTTAATAATTAAACAAAGATAACT . : . : . : . : . : . : R2+ CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C R3+ CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C R1+ CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C R4- CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C R5- GCGCACCGGACCAGCCCCTATAGAAACCTATGAAGAGTCACCTTCTCAA R6- CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C ____________________________________________________________ consensus CCCTCGTGTGCGCGCACCGGGCCAGCCCCTATAGAAACATCTGAGGAGTCACTTCCTC-C . : . : . : . : . : . : R2+ CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG R3+ CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG R1+ CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG R4- CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG R5- CTTGACTATCGCCCGCCCGGCCGGATGTAGTCGCCTCCTGGCAAGCTTCAGGCACCTCAG R6- CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG ____________________________________________________________ consensus CATGACTCTCGCCCGCCCGGCCGGCTGGAGTCGGCTCCTGGCAAGCTTCAGGCACCTCAG . : . : . : . : . : . : R2+ TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTCCAGTTCTC R3+ TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTTCAGTTCGT R1+ TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTCCAGTTCTC R4- TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTCCAGTTCTC R5- TTGTCATGATTACCCACAGCCCACTTTCCTTATCGAAGCCCTTGAGAGCCTCCAGTCCTC R6- TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTCCAGTTCTC ____________________________________________________________ consensus TTGTCCTGAATACACACAGCACCCTTTCCTTACTGAAGCCCCTGAGAGCCTCCAGTTCTC . : . : . : . : . : . : R2+ CCTCCTTGCT-CACCCAGACTTCCTCCCTCCCGGCCCCTTCAGCGTTCCAAAGGGTAAAT R3+ CCTCCTTGCTTCACCACACTTTCCTCCTTCCGGGCCCCTTCAGCGTTCCAAAGGGGAAAT R1+ CCTCCTTGCT-CACCCACACTTCCTCCCTCCCGGCCCCTTCAGCGTTCCCAAAGGTAAAT R4- CCTCCTTGCT-CACCCACACTTCCTCCCTCCCGGCCCCTTCAGCGTTCCAAAGGGTAAAT R5- CCTACACGTT-CCCACACAATACCTCCATCCCGGCCCCCTCAGAGTTCCAAAGGGTAAAT R6- CCTCCTTGCT-CACCCACACTTCCTCCCTCCCGGCCCCTTCAGCGTTCCAAAGGGTAAAT ____________________________________________________________ consensus CCTCCTTGCT-CACCCACACTTCCTCCCTCCCGGCCCCTTCAGCGTTCCAAAGGGTAAAT . : . : . : . : . : . : R2+ -GTGGGCTGGGAAGACAGCTCAGCAGTGGAGAAATCGGGGTGCAGG-TCAGTTGCTGCAT R3+ TGTGGGCTGGGAAGACAGCTCA R1+ -GTGGGCTGGGA R4- -GTGGGCTGGGAAGACAGCTCAGCAGTGGAGAAATCGGGGTGCAGG-TCAGTTGCTGCAT R5- -GTGGGCTGGGAAGCCAGCTCAGCAGTGGAGACACCGGGGTGCAGAATCAGTCGCTGTAT R6- -GTGGGCTGGGAAGACAGCTCAGCAGTGGAGAAATCGGGGTGCAGG-TCAGTTGCTGCAT ____________________________________________________________ consensus -GTGGGCTGGGAAGACAGCTCAGCAGTGGAGAAATCGGGGTGCAGG-TCAGTTGCTGCAT . : . : . : . : . : . : R2+ AGACACACAGGTACACACACATTATTCAAAATTAAAAAAAGAAAAA R4- AGACACACAGGTACACACACAT-ATACAAAATTAAAAAAAAAAAAAACCAACAGTTTCTT R5- AGACACACAGGTACACACACAT-ATACAAAATTATAAAATAAACATACCACCAGTTTCTT R6- AGACACACAGGTACACACACAT-ATACAAAATTAAAAAAAAAAAAAACCAACAGTTTCTT ____________________________________________________________ consensus AGACACACAGGTACACACACAT-ATACAAAATTAAAAAAAAAAAAAACCAACAGTTTCTT . : . : . : . : . : . : R4- TGAGATAAAGACTCATTATGTAGCATTGACTGGCCTAGAACTCATAGAGATCCACATGCC R5- TGAGATAAAGACTCATTATGTAGCATTGACTGGCCTAGAACTCATAGAGCTCCACATGCC R6- TGAGATAAAGACTCATTATGTAGCATTGACTGGCCTAGAACTCATAGAGATCCACATGCC ____________________________________________________________ consensus TGAGATAAAGACTCATTATGTAGCATTGACTGGCCTAGAACTCATAGAGATCCACATGCC . : . : . : . : . : . : R4- TCTGTCTCCCAAGTGCTAGGATTAAAGGTGTGTACCATCGTGCCTGGCAAAAATTTTAAA R5- TCTGTCTCCCAAGTGCTCGGATCATAGGTGTGTACCATCGTGCATGCCAAAAATTTTAAA R6- TCTGTCTCCCAAGTGCTAGGATTAAAGGTGTGTACCATCGTGCCTGGCAAAAATTTTAAA ____________________________________________________________ consensus TCTGTCTCCCAAGTGCTAGGATTAAAGGTGTGTACCATCGTGCCTGGCAAAAATTTTAAA . : . : . : . : . : . : R4- GAACACACACA-CACAGACACACACNNA---------CCACATATGT-GTGTGTGTGTAT R5- GACCACACACAACACAGTATATCAACCTATCTACC--ACACATATGTCGTGTGTGTGTAT R6- GAACACACACA-CACAGACACACACACACACACACACACACATATGT-GTGTGTGTGTAT ____________________________________________________________ consensus GAACACACACA-CACAGACACACACACACACACACACACACATATGT-GTGTGTGTGTAT . : . : . : . : . : . : R4- ATATGTATATATACACACAGATATTAAAGAGTTACATATTCTTTATATATTGCATATTAT R5- ATATGTATATATACACACAGATATTAAAGAGTTACATATTCTTAATATATTGC R6- ATATGTATATATACACACAGATATTAAAGAGTTACATATTCTTTATATATTGCATATTAT ____________________________________________________________ consensus ATATGTATATATACACACAGATATTAAAGAGTTACATATTCTTTATATATTGCATATTAT . : . : . : . : . : . : R4- ATATTATAT-ACATATCACATT R6- ATATTATATTACATATCACATT ____________________________________________________________ consensus ATATTATATTACATATCACATT